Protein ZmOrphan56
ZmOrphan56 is a protein in the Orphans family.
Information
Orphans Name: ZmOrphan56
Species: Maize
Orphans Family: Orphans
Gene Name(Synonym): PRH13
Uniprot ID: B6SVM9

Protein ZmOrphan56

ZmOrphan56 is a protein in the Orphans family.

Overview of domains present in v5 transcripts
PF00481
Zm00001eb160470_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d044301DAPseq no logo sequence fimo position
Zm00001d044301DAPseq no logo sequence fimo position
Zm00001d044301ChIPseq no logo sequence fimo position
Zm00001d044301PChIPseq no logo sequence fimo position

Interactions where ZmOrphan56 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmOrphan56 is the target  
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There are 128 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb160470_T001 from maize genome v5

Amino Acid Sequence
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MEDVVAVVASLSAPPAPAFSPAAAGLTLIAAAVADPIAAVVVGAMEGVSVPVTVPPVRTASAVDDDALAPGEEGGDASLA
GSPCSVVSDCSSVASADFEGVGLCFFGAAAGAEGGPMVLEDSTASAATVEAEARVAAGGRSVFAVDCVPLWGYTSICGRR
PEMEDAVAIVPRFFDLPLWLLTGNAMVDGLDPMTFRLPAHFFGVYDGHGGAQVANYCRERLHVALLEQLSRIEETACAAN
LGDMEFKKQWEKVFVDSYARVDDEVGGNTMRGGGEEAGTSDAAMTLVPEPVAPETVGSTAVVAVICSSHIIVSNCGDSRA
VLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEVTIVPRAKDDECLIL
ASDGLWDVMSNEEVCEIARKRILLWHKKNSTSSSSAPRVGDSADSAAQAAAECLSKLALQKGSKDNITVLVI

MEDVVAVVASLSAPPAPAFSPAAAGLTLIAAAVADPIAAVVVGAMEGVSVPVTVPPVRTASAVDDDALAPGEEGGDASLA
GSPCSVVSDCSSVASADFEGVGLCFFGAAAGAEGGPMVLEDSTASAATVEAEARVAAGGRSVFAVDCVPLWGYTSICGRR
PEMEDAVAIVPRFFDLPLWLLTGNAMVDGLDPMTFRLPAHFFGVYDGHGGAQVANYCRERLHVALLEQLSRIEETACAAN
LGDMEFKKQWEKVFVDSYARVDDEVGGNTMRGGGEEAGTSDAAMTLVPEPVAPETVGSTAVVAVICSSHIIVSNCGDSRA
VLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEVTIVPRAKDDECLIL
ASDGLWDVMSNEEVCEIARKRILLWHKKNSTSSSSAPRVGDSADSAAQAAAECLSKLALQKGSKDNITVLVI

MEDVVAVVASLSAPPAPAFSPAAAGLTLIAAAVADPIAAVVVGAMEGVSVPVTVPPVRTASAVDDDALAPGEEGGDASLA
GSPCSVVSDCSSVASADFEGVGLCFFGAAAGAEGGPMVLEDSTASAATVEAEARVAAGGRSVFAVDCVPLWGYTSICGRR
PEMEDAVAIVPRFFDLPLWLLTGNAMVDGLDPMTFRLPAHFFGVYDGHGGAQVANYCRERLHVALLEQLSRIEETACAAN
LGDMEFKKQWEKVFVDSYARVDDEVGGNTMRGGGEEAGTSDAAMTLVPEPVAPETVGSTAVVAVICSSHIIVSNCGDSRA
VLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEVTIVPRAKDDECLIL
ASDGLWDVMSNEEVCEIARKRILLWHKKNSTSSSSAPRVGDSADSAAQAAAECLSKLALQKGSKDNITVLVI

MEDVVAVVASLSAPPAPAFSPAAAGLTLIAAAVADPIAAVVVGAMEGVSVPVTVPPVRTASAVDDDALAPGEEGGDASLA
GSPCSVVSDCSSVASADFEGVGLCFFGAAAGAEGGPMVLEDSTASAATVEAEARVAAGGRSVFAVDCVPLWGYTSICGRR
PEMEDAVAIVPRFFDLPLWLLTGNAMVDGLDPMTFRLPAHFFGVYDGHGGAQVANYCRERLHVALLEQLSRIEETACAAN
LGDMEFKKQWEKVFVDSYARVDDEVGGNTMRGGGEEAGTSDAAMTLVPEPVAPETVGSTAVVAVICSSHIIVSNCGDSRA
VLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEVTIVPRAKDDECLIL
ASDGLWDVMSNEEVCEIARKRILLWHKKNSTSSSSAPRVGDSADSAAQAAAECLSKLALQKGSKDNITVLVI

MEDVVAVVASLSAPPAPAFSPAAAGLTLIAAAVADPIAAVVVGAMEGVSVPVTVPPVRTASAVDDDALAPGEEGGDASLA
GSPCSVVSDCSSVASADFEGVGLCFFGAAAGAEGGPMVLEDSTASAATVEAEARVAAGGRSVFAVDCVPLWGYTSICGRR
PEMEDAVAIVPRFFDLPLWLLTGNAMVDGLDPMTFRLPAHFFGVYDGHGGAQVANYCRERLHVALLEQLSRIEETACAAN
LGDMEFKKQWEKVFVDSYARVDDEVGGNTMRGGGEEAGTSDAAMTLVPEPVAPETVGSTAVVAVICSSHIIVSNCGDSRA
VLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEVTIVPRAKDDECLIL
ASDGLWDVMSNEEVCEIARKRILLWHKKNSTSSSSAPRVGDSADSAAQAAAECLSKLALQKGSKDNITVLVI

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00481
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Nucleotide Sequence
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GAGCACGCGGCAGCGCACTGCGCAC...

GRMZM2G134628_T01 from maize genome v3


Related TFome: pUT6831

Amino Acid Sequence
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MEDVVAVVASLSAPPAPAFSPAAAGLTLIAAAVADPIAAVVVGAMEGVSVPVTVPPVRTASAVDDDALAPGEEGGDASLA
GSPCSVVSDCSSVASADFEGVGLCFFGAAAGAEGGPMVLEDSTASAATVEAEARVAAGGRSVFAVDCVPLWGYTSICGRR
PEMEDAVAIVPRFFDLPLWLLTGNAMVDGLDPMTFRLPAHFFGVYDGHGGAQVANYCRERLHVALLEQLSRIEETACAAN
LGDMEFKKQWEKVFVDSYARVDDEVGGNTMRGGGEEAGTSDAAMTLVPEPVAPETVGSTAVVAVICSSHIIVSNCGDSRA
VLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEVTIVPRAKDDECLIL
ASDGLWDVMSNEEVCEIARKRILLWHKKNSTSSSSAPRVGDSADSAAQAAAECLSKLALQKGSKDNITVVVVDLKAQRKF
KSKT

Nucleotide Sequence
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ACCCCCAGTCCCACCGAGCACGCGG...

Zm00001d044301_T001 from maize genome v4

Amino Acid Sequence
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MEDVVAVVASLSAPPAPAFSPAAAGLTLIAAAVADPIAAVVVGAMEGVSVPVTVPPVRTASAVDDDALAPGEEGGDASLA
GSPCSVVSDCSSVASADFEGVGLCFFGAAAGAEGGPMVLEDSTASAATVEAEARVAAGGRSVFAVDCVPLWGYTSICGRR
PEMEDAVAIVPRFFDLPLWLLTGNAMVDGLDPMTFRLPAHFFGVYDGHGGAQVANYCRERLHVALLEQLSRIEETACAAN
LGDMEFKKQWEKVFVDSYARVDDEVGGNTMRGGGEEAGTSDAAMTLVPEPVAPETVGSTAVVAVICSSHIIVSNCGDSRA
VLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEVTIVPRAKDDECLIL
ASDGLWDVMSNEEVCEIARKRILLWHKKNSTSSSSAPRVGDSADSAAQAAAECLSKLALQKGSKDNITVVVVDLKAQRKF
KSKT

Nucleotide Sequence
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GAGCACGCGGCAGCGCACTGCGCAC...

Zm00001d044301_T002 from maize genome v4

Amino Acid Sequence
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MSRSIGDRYLKPWIIPVPEVTIVPRAKDDECLILASDGLWDVMSNEEVCEIARKRILLWHKKNSTSSSSAPRVGDSADSA
AQAAAECLSKLALQKGSKDNITVVVVDLKAQRKFKSKT

Nucleotide Sequence
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GTGCTCTGCCGAGGCAAGCAGCCTG...

Zm00001d044301_T003 from maize genome v4

Amino Acid Sequence
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MSNEEVCEIARKRILLWHKKNSTSSSSAPRVGDSADSAAQAAAECLSKLALQKGSKDNITVVVVDLKAQRKFKSKT

Nucleotide Sequence
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GATGACGAGTGCCTTATTCTTGCCA...

Zm00001eb160470_T002 from maize genome v5

Amino Acid Sequence
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MEDVVAVVASLSAPPAPAFSPAAAGLTLIAAAVADPIAAVVVGAMEGVSVPVTVPPVRTASAVDDDALAPGEEGGDASLA
GSPCSVVSDCSSVASADFEGVGLCFFGAAAGAEGGPMVLEDSTASAATVEAEARVAAGGRSVFAVDCVPLWGYTSICGRR
PEMEDAVAIVPRFFDLPLWLLTGNAMVDGLDPMTFRLPAHFFGVYDGHGGAQVANYCRERLHVALLEQLSRIEETACAAN
LGDMEFKKQWEKVFVDSYARVDDEVGGNTMRGGGEEAGTSDAAMTLVPEPVAPETVGSTAVVAVICSSHIIVSNCGDSRA
VLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEVTIVPRAKDDECLIL
ASDGLWDVMSNEEVCEIARKRILLWHKKNSTSSSSAPRVGDSADSAAQAAAECLSKLALQKGSKDNITVVVVDLKAQRKF
KSKT

Nucleotide Sequence
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GAGCACGCGGCAGCGCACTGCGCAC...


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